Bug: Hostile crew remains aboard capped ship

[vtecem]

So last night I had myself my first L/XL (I don't know which because it's not obviously apparent) ship cap... It was a Paranid Gas Miner Sentinel (I'll have to check the ship once home) but once I claimed the ship the original Paranid crew are still aboard and hostile (on the bridge). I can not talk to them due to the hostility, and when I tried to fly the ship manually it would keep stopping like the AI tried to take back control. I was able to get in docked with a marine promoted to captain, and expected (hoped) the hostile crew would de-board once on a station.

They didn't, but at least the AI isn't trying to fly the ship anymore...

Also, the crew are now mixed on my bridge with some hostile and some green.

A save/reload didn't fix the issue, and I'm hoping I haven't corrupted my save somehow (I at least have a save before the cap).