The save game time stamps seemed a little weird, but I thought maybe my memory was playing tricks on me . I get in game and fine myself in a game that I not only scrapped, but deleted the save files for [the first hint was the scripts I run re-initializing themselves].
I checked the folders previous versions and it showed the save files I had deleted before starting the new game [which is right], but no changes 'detected' by the operating system since [as in removal of files at least]. I did not run any file recovery software or anything like that - and the game doesn't support Steam Cloud so it wasn't one of Steams wonderful synch errors.
Any ideas on how this could have happened? I am guessing my last 'real' save file might be in there somewhere, but the time stamps are all wrong and I don't remember where I left off. Is it possible that installing new scripts could have somehow 'recreated' old save data in the new files?
Here is a list of scripts I run [I just installed Pirate Guild, Improved Races, Marine Repairs, and Mobile Mining Mk2 this morning [with the required lib[s]]

https://picasaweb.google.com/lh/photo/r ... directlink
Any ideas? The last game I was working on was finally going well for me.. now I have to face starting all over again :/